■ 氏名
櫻井 哲也 (サクライ テツヤ)
SAKURAI Tetsuya

■ 所属部局/職名
Research and Education Faculty, Multidisciplinary Science Cluster, Interdisciplinary Science Unit/Associate Professor
教育研究部 総合科学系 複合領域科学部門/准教授

■ 学部・学科・コース等
Faculty of Agriculture and Marine Science, Department of Marine Resource Science, Marine Biological Chemistry Course
農林海洋科学部 海洋資源科学科 海洋生命科学コース

■ 連絡先
住 所高知県南国市物部乙200
電 話
F A X
E-Mailtetsuya.sakurai●kochi-u.ac.jp    (送信の際は“●”を半角の“@”に変更して送信してください。)
U R L

■ 出身大学院・研究科等

■ 出身学校・専攻等
横浜市立大学 (文理学部(理科系) ) (卒業)

■ 取得学位
博士(農学) (論文) 東京大学

■ 研究職歴

■ 委員歴・役員歴

■ 受賞学術賞
CIAT (International Center for Tropical Agriculture, Colombia) Outstanding Research Publication Award (2008) 国外

■ 所属学会
日本植物生理学会
 ( 国内)
日本分子生物学会
 ( 国内)

■ 専門分野
ゲノム情報科学

■ 主な研究テーマ・活動
藻類等の生命情報を網羅的に用いた比較解析によるゲノム研究

■ 研究についてのPR

■ 社会人・生徒を対象として可能な講演・授業(例えば講演題目)

■ 研究業績(論文・解説)
Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells.
 Scientific reports (Ogita S, Nomura T, Kato Y, Uehara-Yamaguchi Y, Inoue K, Yoshida T, Sakurai T, Shinozaki K, Mochida K) 8/1, 11347 201807 () 10.1038/s41598-018-29645-7

Identification of Arabidopsis genic and non-genic promoters by paired-end sequencing of TSS tags.
 The Plant journal : for cell and molecular biology (Tokizawa M, Kusunoki K, Koyama H, Kurotani A, Sakurai T, Suzuki Y, Sakamoto T, Kurata T, Yamamoto YY) 90/3, 587-605 201705 () 10.1111/tpj.13511

Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice and maize.
 The Plant journal : for cell and molecular biology (Maruyama K, Ogata T, Kanamori N, Yoshiwara K, Goto S, Yamamoto YY, Tokoro Y, Noda C, Takaki Y, Urawa H, Iuchi S, Urano K, Yoshida T, Sakurai T, Kojima M, Sakakibara H, Shinozaki K, Yamaguchi-Shinozaki K) 89/4, 671-680 201702 () 10.1111/tpj.13420

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume.
 The Plant journal : for cell and molecular biology (Mochida K, Sakurai T, Seki H, Yoshida T, Takahagi K, Sawai S, Uchiyama H, Muranaka T, Saito K) 89/2, 181-194 201701 () 10.1111/tpj.13385

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.
 Frontiers in plant science (Koda S, Onda Y, Matsui H, Takahagi K, Yamaguchi-Uehara Y, Shimizu M, Inoue K, Yoshida T, Sakurai T, Honda H, Eguchi S, Nishii R, Mochida K) 8/, 2055 2017 () 10.3389/fpls.2017.02055

Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes.
 Plant & cell physiology (Kurotani A, Yamada Y, Sakurai T) 58/1, e6 201701 () 10.1093/pcp/pcw212

Efficient and Heritable Targeted Mutagenesis in Mosses Using the CRISPR/Cas9 System.
 Plant & cell physiology (Nomura T, Sakurai T, Osakabe Y, Osakabe K, Sakakibara H) 57/12, 2600-2610 201612 () 10.1093/pcp/pcw173

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.
 Scientific reports (Takahagi K, Uehara-Yamaguchi Y, Yoshida T, Sakurai T, Shinozaki K, Mochida K, Saisho D) 6/, 33199 201609 () 10.1038/srep33199

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.
 Journal of plant research (Utsumi Y, Tanaka M, Kurotani A, Yoshida T, Mochida K, Matsui A, Ishitani M, Sraphet S, Whankaew S, Asvarak T, Narangajavana J, Triwitayakorn K, Sakurai T, Seki M) 129/4, 711-726 201607 () 10.1007/s10265-016-0828-x

Chemical Assignment of Structural Isomers of Sulfur-Containing Metabolites in Garlic by Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Mass Spectrometry.
 The Journal of nutrition (Nakabayashi R, Sawada Y, Aoyagi M, Yamada Y, Hirai MY, Sakurai T, Kamoi T, Rowan DD, Saito K) 146/2, 397S-402S 201602 () 10.3945/jn.114.202317

Content of intrinsic disorder influences the outcome of cell-free protein synthesis.
 Scientific reports (Tokmakov AA, Kurotani A, Ikeda M, Terazawa Y, Shirouzu M, Stefanov V, Sakurai T, Yokoyama S) 5/, 14079 201509 () 10.1038/srep14079

Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon.
 Scientific reports (Kakei Y, Mochida K, Sakurai T, Yoshida T, Shinozaki K, Shimada Y) 5/, 14476 201509 () 10.1038/srep14476

Genome-wide analysis reveals phytohormone action during cassava storage root initiation.
 Plant molecular biology (Sojikul P, Saithong T, Kalapanulak S, Pisuttinusart N, Limsirichaikul S, Tanaka M, Utsumi Y, Sakurai T, Seki M, Narangajavana J) 88/6, 531-543 201508 () 10.1007/s11103-015-0340-z

In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.
 International journal of molecular sciences (Kurotani A, Sakurai T) 16/8, 19812-19835 201508 () 10.3390/ijms160819812

Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.
 Proceedings. Biological sciences (Onda Y, Hashimoto K, Yoshida T, Sakurai T, Sawada Y, Hirai MY, Toyooka K, Mochida K, Shinozaki K) 282/1811, 201507 () 10.1098/rspb.2015.0964

Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production.
 Scientific reports (Onda Y, Mochida K, Yoshida T, Sakurai T, Seymour RS, Umekawa Y, Pirintsos SA, Shinozaki K, Ito K) 5/, 8753 201503 () 10.1038/srep08753

Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.
 Plant & cell physiology (Kurotani A, Yamada Y, Shinozaki K, Kuroda Y, Sakurai T) 56/1, e11 201501 () 10.1093/pcp/pcu176

Whole transcriptome analysis using next-generation sequencing of sterile-cultured Eisenia andrei for immune system research.
 PloS one (Mikami Y, Fukushima A, Kuwada-Kusunose T, Sakurai T, Kitano T, Komiyama Y, Iwase T, Komiyama K) 10/2, e0118587 2015 () 10.1371/journal.pone.0118587

Correlations between predicted protein disorder and post-translational modifications in plants.
 Bioinformatics (Oxford, England) (Kurotani A, Tokmakov AA, Kuroda Y, Fukami Y, Shinozaki K, Sakurai T) 30/8, 1095-1103 201404 () 10.1093/bioinformatics/btt762

ppdb: plant promoter database version 3.0.
 Nucleic acids research (Hieno A, Naznin HA, Hyakumachi M, Sakurai T, Tokizawa M, Koyama H, Sato N, Nishiyama T, Hasebe M, Zimmer AD, Lang D, Reski R, Rensing SA, Obokata J, Yamamoto YY) 42/Database issue, D1188-92 201401 () 10.1093/nar/gkt1027

RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary.
 Plant & cell physiology (Akiyama K, Kurotani A, Iida K, Kuromori T, Shinozaki K, Sakurai T) 55/1, e4 201401 () 10.1093/pcp/pct165

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones.
 Plant & cell physiology (Yamazaki M, Mochida K, Asano T, Nakabayashi R, Chiba M, Udomson N, Yamazaki Y, Goodenowe DB, Sankawa U, Yoshida T, Toyoda A, Totoki Y, Sakaki Y, G?ngora-Castillo E, Buell CR, Sakurai T, Saito K) 54/5, 686-696 201305 () 10.1093/pcp/pct040

Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals.
 Plant & cell physiology (Ramilowski JA, Sawai S, Seki H, Mochida K, Yoshida T, Sakurai T, Muranaka T, Saito K, Daub CO) 54/5, 697-710 201305 () 10.1093/pcp/pct057

TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS) 20/2, 151-162 201304 () 10.1093/dnares/dss040

The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins.
 Plant & cell physiology (Myouga F, Akiyama K, Tomonaga Y, Kato A, Sato Y, Kobayashi M, Nagata N, Sakurai T, Shinozaki K) 54/2, e2 201302 () 10.1093/pcp/pcs171

PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation.
 Plant & cell physiology (Sakurai T, Yamada Y, Sawada Y, Matsuda F, Akiyama K, Shinozaki K, Hirai MY, Saito K) 54/2, e5 201302 () 10.1093/pcp/pcs184

UniVIO: a multiple omics database with hormonome and transcriptome data from rice.
 Plant & cell physiology (Kudo T, Akiyama K, Kojima M, Makita N, Sakurai T, Sakakibara H) 54/2, e9 201302 () 10.1093/pcp/pct003

Combination of liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs.
 Analytical chemistry (Nakabayashi R, Sawada Y, Yamada Y, Suzuki M, Hirai MY, Sakurai T, Saito K) 85/3, 1310-1315 201302 () 10.1021/ac302733c

Genome-wide discovery and information resource development of DNA polymorphisms in cassava.
 PloS one (Sakurai T, Mochida K, Yoshida T, Akiyama K, Ishitani M, Seki M, Shinozaki K) 8/9, e74056 2013 () 10.1371/journal.pone.0074056

Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources.
 PloS one (Mochida K, Uehara-Yamaguchi Y, Takahashi F, Yoshida T, Sakurai T, Shinozaki K) 8/10, e75265 2013 () 10.1371/journal.pone.0075265

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database.
 Phytochemistry (Sawada Y, Nakabayashi R, Yamada Y, Suzuki M, Sato M, Sakata A, Akiyama K, Sakurai T, Matsuda F, Aoki T, Hirai MY, Saito K) 82/, 38-45 201210 () 10.1016/j.phytochem.2012.07.007

A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica.
 BMC genomics (Ueno S, Moriguchi Y, Uchiyama K, Ujino-Ihara T, Futamura N, Sakurai T, Shinohara K, Tsumura Y) 13/, 136 201204 () 10.1186/1471-2164-13-136

Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Maruyama K, Todaka D, Mizoi J, Yoshida T, Kidokoro S, Matsukura S, Takasaki H, Sakurai T, Yamamoto YY, Yoshiwara K, Kojima M, Sakakibara H, Shinozaki K, Yamaguchi-Shinozaki K) 19/1, 37-49 2012 () 10.1093/dnares/dsr040

Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Utsumi Y, Tanaka M, Morosawa T, Kurotani A, Yoshida T, Mochida K, Matsui A, Umemura Y, Ishitani M, Shinozaki K, Sakurai T, Seki M) 19/4, 335-345 2012 () 10.1093/dnares/dss016

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS) 18/5, 321-332 201110 () 10.1093/dnares/dsr019

Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops.
 Plant & cell physiology (Mochida K, Uehara-Yamaguchi Y, Yoshida T, Sakurai T, Shinozaki K) 52/5, 785-803 201105 () 10.1093/pcp/pcr035

RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function.
 Plant & cell physiology (Sakurai T, Kondou Y, Akiyama K, Kurotani A, Higuchi M, Ichikawa T, Kuroda H, Kusano M, Mori M, Saitou T, Sakakibara H, Sugano S, Suzuki M, Takahashi H, Takahashi S, Takatsuji H, Yokotani N, Yoshizumi T, Saito K, Shinozaki K, Oda K, Hirochika H, Matsui M) 52/2, 265-273 201102 () 10.1093/pcp/pcq190

Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS) 17/5, 303-324 201010 () 10.1093/dnares/dsq021

Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources.
 Journal of plant research (Hirai MY, Sawada Y, Kanaya S, Kuromori T, Kobayashi M, Klausnitzer R, Hanada K, Akiyama K, Sakurai T, Saito K, Shinozaki K) 123/3, 291-298 201005 () 10.1007/s10265-010-0337-2

The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis.
 The Plant journal : for cell and molecular biology (Myouga F, Akiyama K, Motohashi R, Kuromori T, Ito T, Iizumi H, Ryusui R, Sakurai T, Shinozaki K) 61/3, 529-542 201002 () 10.1111/j.1365-313X.2009.04074.x

sORF finder: a program package to identify small open reading frames with high coding potential.
 Bioinformatics (Oxford, England) (Hanada K, Akiyama K, Sakurai T, Toyoda T, Shinozaki K, Shiu SH) 26/3, 399-400 201002 () 10.1093/bioinformatics/btp688

AtMetExpress development: a phytochemical atlas of Arabidopsis development.
 Plant physiology (Matsuda F, Hirai MY, Sasaki E, Akiyama K, Yonekura-Sakakibara K, Provart NJ, Sakurai T, Shimada Y, Saito K) 152/2, 566-578 201002 () 10.1104/pp.109.148031

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors.
 Bioinformatics (Oxford, England) (Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS) 26/2, 290-291 201001 () 10.1093/bioinformatics/btp645

Genome sequence of the palaeopolyploid soybean.
 Nature (Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA) 463/7278, 178-183 201001 () 10.1038/nature08670

In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS) 16/6, 353-369 200912 () 10.1093/dnares/dsp023

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis.
 The Plant journal : for cell and molecular biology (Yamamoto YY, Yoshitsugu T, Sakurai T, Seki M, Shinozaki K, Obokata J) 60/2, 350-362 200910 () 10.1111/j.1365-313X.2009.03958.x

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.
 Plant physiology (Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K) 150/3, 1135-1146 200907 () 10.1104/pp.109.138214

Systematic approaches to using the FOX hunting system to identify useful rice genes.
 The Plant journal : for cell and molecular biology (Kondou Y, Higuchi M, Takahashi S, Sakurai T, Ichikawa T, Kuroda H, Yoshizumi T, Tsumoto Y, Horii Y, Kawashima M, Hasegawa Y, Kuriyama T, Matsui K, Kusano M, Albinsky D, Takahashi H, Nakamura Y, Suzuki M, Sakakibara H, Kojima M, Akiyama K, Kurotani A, Seki M, Fujita M, Enju A, Yokotani N, Saitou T, Ashidate K, Fujimoto N, Ishikawa Y, Mori Y, Nanba R, Takata K, Uno K, Sugano S, Natsuki J, Dubouzet JG, Maeda S, Ohtake M, Mori M, Oda K, Takatsuji H, Hirochika H, Matsui M) 57/5, 883-894 200903 () 10.1111/j.1365-313X.2008.03733.x

Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants.
 Plant & cell physiology (Sawada Y, Akiyama K, Sakata A, Kuwahara A, Otsuki H, Sakurai T, Saito K, Hirai MY) 50/1, 37-47 200901 () 10.1093/pcp/pcn183

Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Umezawa T, Sakurai T, Totoki Y, Toyoda A, Seki M, Ishiwata A, Akiyama K, Kurotani A, Yoshida T, Mochida K, Kasuga M, Todaka D, Maruyama K, Nakashima K, Enju A, Mizukado S, Ahmed S, Yoshiwara K, Harada K, Tsubokura Y, Hayashi M, Sato S, Anai T, Ishimoto M, Funatsuki H, Teraishi M, Osaki M, Shinano T, Akashi R, Sakaki Y, Yamaguchi-Shinozaki K, Shinozaki K) 15/6, 333-346 200812 () 10.1093/dnares/dsn024

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila.
 BMC plant biology (Taji T, Sakurai T, Mochida K, Ishiwata A, Kurotani A, Totoki Y, Toyoda A, Sakaki Y, Seki M, Ono H, Sakata Y, Tanaka S, Shinozaki K) 8/, 115 200811 () 10.1186/1471-2229-8-115

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access.
 The Plant journal : for cell and molecular biology (Goda H, Sasaki E, Akiyama K, Maruyama-Nakashita A, Nakabayashi K, Li W, Ogawa M, Yamauchi Y, Preston J, Aoki K, Kiba T, Takatsuto S, Fujioka S, Asami T, Nakano T, Kato H, Mizuno T, Sakakibara H, Yamaguchi S, Nambara E, Kamiya Y, Takahashi H, Hirai MY, Sakurai T, Shinozaki K, Saito K, Yoshida S, Shimada Y) 55/3, 526-542 200808 () 10.1111/j.0960-7412.2008.03510.x

TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae.
 BMC plant biology (Mochida K, Saisho D, Yoshida T, Sakurai T, Shinozaki K) 8/, 72 200806 () 10.1186/1471-2229-8-72

PRIMe: a Web site that assembles tools for metabolomics and transcriptomics.
 In silico biology (Akiyama K, Chikayama E, Yuasa H, Shimada Y, Tohge T, Shinozaki K, Hirai MY, Sakurai T, Kikuchi J, Saito K) 8/43894, 339-345 2008 ()

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.
 BMC genomics (Nanjo T, Sakurai T, Totoki Y, Toyoda A, Nishiguchi M, Kado T, Igasaki T, Futamura N, Seki M, Sakaki Y, Shinozaki K, Shinohara K) 8/, 448 200712 () 10.1186/1471-2164-8-448

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response.
 BMC plant biology (Sakurai T, Plata G, Rodr?guez-Zapata F, Seki M, Salcedo A, Toyoda A, Ishiwata A, Tohme J, Sakaki Y, Shinozaki K, Ishitani M) 7/, 66 200712 () 10.1186/1471-2229-7-66

Identification of plant promoter constituents by analysis of local distribution of short sequences.
 BMC genomics (Yamamoto YY, Ichida H, Matsui M, Obokata J, Sakurai T, Satou M, Seki M, Shinozaki K, Abe T) 8/, 67 200703 () 10.1186/1471-2164-8-67

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
 Genome research (Rice Annotation Project., Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, Habara T, Haberer G, Han B, Harada E, Hiraki AT, Hirochika H, Hoen D, Hokari H, Hosokawa S, Hsing YI, Ikawa H, Ikeo K, Imanishi T, Ito Y, Jaiswal P, Kanno M, Kawahara Y, Kawamura T, Kawashima H, Khurana JP, Kikuchi S, Komatsu S, Koyanagi KO, Kubooka H, Lieberherr D, Lin YC, Lonsdale D, Matsumoto T, Matsuya A, McCombie WR, Messing J, Miyao A, Mulder N, Nagamura Y, Nam J, Namiki N, Numa H, Nurimoto S, O'Donovan C, Ohyanagi H, Okido T, Oota S, Osato N, Palmer LE, Quetier F, Raghuvanshi S, Saichi N, Sakai H, Sakai Y, Sakata K, Sakurai T, Sato F, Sato Y, Schoof H, Seki M, Shibata M, Shimizu Y, Shinozaki K, Shinso Y, Singh NK, Smith-White B, Takeda J, Tanino M, Tatusova T, Thongjuea S, Todokoro F, Tsugane M, Tyagi AK, Vanavichit A, Wang A, Wing RA, Yamaguchi K, Yamamoto M, Yamamoto N, Yu Y, Zhang H, Zhao Q, Higo K, Burr B, Gojobori T, Sasaki T) 17/2, 175-183 200702 () 10.1101/gr.5509507

A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis.
 The Plant journal : for cell and molecular biology (Kuromori T, Wada T, Kamiya A, Yuguchi M, Yokouchi T, Imura Y, Takabe H, Sakurai T, Akiyama K, Hirayama T, Okada K, Shinozaki K) 47/4, 640-651 200608 () 10.1111/j.1365-313X.2006.02808.x

Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays.
 Functional & integrative genomics (Oono Y, Seki M, Satou M, Iida K, Akiyama K, Sakurai T, Fujita M, Yamaguchi-Shinozaki K, Shinozaki K) 6/3, 212-234 200607 () 10.1007/s10142-005-0014-z

A flexible representation of omic knowledge for thorough analysis of microarray data.
 Plant methods (Hasegawa Y, Seki M, Mochizuki Y, Heida N, Hirosawa K, Okamoto N, Sakurai T, Satou M, Akiyama K, Iida K, Lee K, Kanaya S, Demura T, Shinozaki K, Konagaya A, Toyoda T) 2/, 5 200603 () 10.1186/1746-4811-2-5

A resource of 5,814 dissociation transposon-tagged and sequence-indexed lines of Arabidopsis transposed from start loci on chromosome 5.
 Plant & cell physiology (Ito T, Motohashi R, Kuromori T, Noutoshi Y, Seki M, Kamiya A, Mizukado S, Sakurai T, Shinozaki K) 46/7, 1149-1153 200507 () 10.1093/pcp/pci112

RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome.
 Nucleic acids research (Sakurai T, Satou M, Akiyama K, Iida K, Seki M, Kuromori T, Ito T, Konagaya A, Toyoda T, Shinozaki K) 33/Database issue, D647-50 200501 () 10.1093/nar/gki014

RARTF: database and tools for complete sets of Arabidopsis transcription factors.
 DNA research : an international journal for rapid publication of reports on genes and genomes (Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K) 12/4, 247-256 2005 () 10.1093/dnares/dsi011

Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray.
 Plant molecular biology (Takahashi S, Seki M, Ishida J, Satou M, Sakurai T, Narusaka M, Kamiya A, Nakajima M, Enju A, Akiyama K, Yamaguchi-Shinozaki K, Shinozaki K) 56/1, 29-55 200409 () 10.1007/s11103-004-2200-0

RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum.
 Molecular plant-microbe interactions : MPMI (Narusaka Y, Narusaka M, Park P, Kubo Y, Hirayama T, Seki M, Shiraishi T, Ishida J, Nakashima M, Enju A, Sakurai T, Satou M, Kobayashi M, Shinozaki K) 17/7, 749-762 200407 () 10.1094/MPMI.2004.17.7.749

Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray.
 Plant physiology (Taji T, Seki M, Satou M, Sakurai T, Kobayashi M, Ishiyama K, Narusaka Y, Narusaka M, Zhu JK, Shinozaki K) 135/3, 1697-1709 200407 () 10.1104/pp.104.039909

A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis.
 The Plant journal : for cell and molecular biology (Kuromori T, Hirayama T, Kiyosue Y, Takabe H, Mizukado S, Sakurai T, Akiyama K, Kamiya A, Ito T, Shinozaki K) 37/6, 897-905 200403 () 10.1111/j.1365.313X.2004.02009.x

RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions.
 Journal of experimental botany (Seki M, Satou M, Sakurai T, Akiyama K, Iida K, Ishida J, Nakajima M, Enju A, Narusaka M, Fujita M, Oono Y, Kamei A, Yamaguchi-Shinozaki K, Shinozaki K) 55/395, 213-223 200401 () 10.1093/jxb/erh007

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.
 Nucleic acids research (Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K) 32/17, 5096-5103 2004 () 10.1093/nar/gkh845

[Arabidopsis functional genomics using full-length cDNAs].
 Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme (Seki M, Shinozaki K, Ishida J, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Iida K, Oono Y) 48/14, 1890-1898 200311 ()

Expression profiles of Arabidopsis phospholipase A IIA gene in response to biotic and abiotic stresses.
 Plant & cell physiology (Narusaka Y, Narusaka M, Seki M, Fujita M, Ishida J, Nakashima M, Enju A, Sakurai T, Satou M, Kamiya A, Park P, Kobayashi M, Shinozaki K) 44/11, 1246-1252 200311 () 10.1093/pcp/pcg138

Empirical analysis of transcriptional activity in the Arabidopsis genome.
 Science (New York, N.Y.) (Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M, Pham P, Cheuk R, Karlin-Newmann G, Liu SX, Lam B, Sakano H, Wu T, Yu G, Miranda M, Quach HL, Tripp M, Chang CH, Lee JM, Toriumi M, Chan MM, Tang CC, Onodera CS, Deng JM, Akiyama K, Ansari Y, Arakawa T, Banh J, Banno F, Bowser L, Brooks S, Carninci P, Chao Q, Choy N, Enju A, Goldsmith AD, Gurjal M, Hansen NF, Hayashizaki Y, Johnson-Hopson C, Hsuan VW, Iida K, Karnes M, Khan S, Koesema E, Ishida J, Jiang PX, Jones T, Kawai J, Kamiya A, Meyers C, Nakajima M, Narusaka M, Seki M, Sakurai T, Satou M, Tamse R, Vaysberg M, Wallender EK, Wong C, Yamamura Y, Yuan S, Shinozaki K, Davis RW, Theologis A, Ecker JR) 302/5646, 842-846 200310 () 10.1126/science.1088305

Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray.
 The Plant journal : for cell and molecular biology (Oono Y, Seki M, Nanjo T, Narusaka M, Fujita M, Satoh R, Satou M, Sakurai T, Ishida J, Akiyama K, Iida K, Maruyama K, Satoh S, Yamaguchi-Shinozaki K, Shinozaki K) 34/6, 868-887 200306 () 10.1046/j.1365-313X.2003.01774.x

The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack.
 Plant & cell physiology (Narusaka Y, Narusaka M, Seki M, Ishida J, Nakashima M, Kamiya A, Enju A, Sakurai T, Satoh M, Kobayashi M, Tosa Y, Park P, Shinozaki K) 44/4, 377-387 200304 () 10.1093/pcp/pcg050

Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray.
 Photochemistry and photobiology (Kimura M, Yamamoto YY, Seki M, Sakurai T, Sato M, Abe T, Yoshida S, Manabe K, Shinozaki K, Matsui M) 77/2, 226-233 200302 () 10.1562/0031-8655(2003)077<0226:IOAGRB>2.0.CO;2

Bipolar localization of putative photoreceptor protein for phototaxis in thermophilic cyanobacterium Synechococcus elongatus.
 Plant & cell physiology (Kondou Y, Mogami N, Hoshi F, Kutsuna S, Nakazawa M, Sakurai T, Matsui M, Kaneko T, Tabata S, Tanaka I, Manabe K) 43/12, 1585-1588 200212 () 10.1093/pcp/pcf176

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray.
 Functional & integrative genomics (Seki M, Ishida J, Narusaka M, Fujita M, Nanjo T, Umezawa T, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K) 2/6, 282-291 200211 () 10.1007/s10142-002-0070-6

[Bioinformatics].
 Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme (Sakurai T, Satou M, Akiyama K, Seki M, Shinozaki K) 47/12 Suppl, 1500-1505 200209 ()

Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.
 The Plant journal : for cell and molecular biology (Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Taji T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K) 31/3, 279-292 200208 () 10.1046/j.1365-313X.2002.01359.x

A new resource of locally transposed Dissociation elements for screening gene-knockout lines in silico on the Arabidopsis genome.
 Plant physiology (Ito T, Motohashi R, Kuromori T, Mizukado S, Sakurai T, Kanahara H, Seki M, Shinozaki K) 129/4, 1695-1699 200208 () 10.1104/pp.002774

Functional annotation of a full-length Arabidopsis cDNA collection.
 Science (New York, N.Y.) (Seki M, Narusaka M, Kamiya A, Ishida J, Satou M, Sakurai T, Nakajima M, Enju A, Akiyama K, Oono Y, Muramatsu M, Hayashizaki Y, Kawai J, Carninci P, Itoh M, Ishii Y, Arakawa T, Shibata K, Shinagawa A, Shinozaki K) 296/5565, 141-145 200204 () 10.1126/science.1071006

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